2IZW Virus date Jul 27, 2006
title Crystal Structure Of Ryegrass Mottle Virus
authors P.Plevka, K.Tars, A.Zeltins, I.Balke, E.Truve, L.Liljas
compound source
Molecule: Ryegrass Mottle Virus Coat Protein
Chain: A, B, C
Fragment: Residues 2-235
Synonym: Coat Protein
Organism_scientific: Ryegrass Mottle Virus
Organism_taxid: 119910
symmetry Space Group: P 1 21 1
R_factor 0.294 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
277.641 298.719 392.485 90.00 92.74 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe three-dimensional structure of ryegrass mottle virus at 2.9 A resolution., Plevka P, Tars K, Zeltins A, Balke I, Truve E, Liljas L, Virology. 2007 Sep 17;. PMID:17881031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2izw.pdb1.gz) 5101 Kb
  • CSU: Contacts of Structural Units for 2IZW
  • Likely Quarternary Molecular Structure file(s) for 2IZW
  • Structure Factors (5472 Kb)
  • Retrieve 2IZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IZW from S2C, [Save to disk]
  • Re-refined 2izw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IZW
  • VIPERdb: visual, structural and computational analysis of 2IZW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IZW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2izw] [2izw_A] [2izw_C] [2izw_B]
  • SWISS-PROT database: [Q9E962]
  • Domain organization of [Q9E962_9VIRU] by SWISSPFAM
  • Other resources with information on 2IZW
  • Community annotation for 2IZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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