2J0A Transferase date Aug 01, 2006
title Structure Of The Catalytic Domain Of Mouse Manic Fringe
authors M.Jinek, Y.W.Chen, H.Clausen, S.M.Cohen, E.Conti
compound source
Molecule: Beta-1,3-N-Acetylglucosaminyltransferase Manic Fr
Chain: A
Fragment: Catalytic Domain, Residues 45-321
Synonym: Manic Fringe, O-Fucosylpeptide 3-Beta-N-Acetylglucosaminyltransferase;
Ec: 2.4.1.222
Engineered: Yes
Mutation: Yes
Other_details: Engineered Mutation To Remove Glycosylation
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 2
R_factor 0.194 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.600 41.400 39.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand K, SO4 enzyme Transferase E.C.2.4.1.222 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the Notch-modifying glycosyltransferase Fringe., Jinek M, Chen YW, Clausen H, Cohen SM, Conti E, Nat Struct Mol Biol. 2006 Oct;13(10):945-6. Epub 2006 Sep 10. PMID:16964258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2j0a.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2J0A
  • CSU: Contacts of Structural Units for 2J0A
  • Likely Quarternary Molecular Structure file(s) for 2J0A
  • Structure Factors (181 Kb)
  • Retrieve 2J0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J0A from S2C, [Save to disk]
  • Re-refined 2j0a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J0A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J0A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j0a] [2j0a_A]
  • SWISS-PROT database: [O09008]
  • Domain organization of [MFNG_MOUSE] by SWISSPFAM
  • Other resources with information on 2J0A
  • Community annotation for 2J0A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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