2J1N Transport Protein date Aug 15, 2006
title Osmoporin Ompc
authors A.Basle, P.Storici, G.Rummel, J.P.Rosenbusch, T.Schirmer
compound source
Molecule: Outer Membrane Protein C
Chain: A, B, C
Synonym: Osmoporin Ompc, Porin Ompc, Outer Membrane Protein
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bzb1107
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bzb1107
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmy150
symmetry Space Group: P 21 21 2
R_factor 0.180 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
200.779 99.391 74.328 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, D12, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • virus receptor activity


    • Primary referenceCrystal structure of osmoporin OmpC from E. coli at 2.0 A., Basle A, Rummel G, Storici P, Rosenbusch JP, Schirmer T, J Mol Biol. 2006 Oct 6;362(5):933-42. Epub 2006 Aug 3. PMID:16949612
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (2j1n.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 2J1N
  • CSU: Contacts of Structural Units for 2J1N
  • Likely Quarternary Molecular Structure file(s) for 2J1N
  • Structure Factors (673 Kb)
  • Retrieve 2J1N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J1N from S2C, [Save to disk]
  • Re-refined 2j1n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J1N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J1N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J1N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j1n_A] [2j1n_C] [2j1n] [2j1n_B]
  • SWISS-PROT database: [P06996]
  • Belongs to the general bacterial porin (gbp) family according to TCDB.
  • Domain organization of [OMPC_ECOLI] by SWISSPFAM
    • Other resources with information on 2J1N
  • Community annotation for 2J1N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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