2J1S Carbohydrate-Binding Protein date Aug 15, 2006
title Structure Of A Streptococcus Pneumoniae Fucose Binding Modul Complex With Fucose
authors A.B.Boraston, D.Wang, R.D.Burke
compound source
Molecule: Fucolectin-Related Protein
Chain: A, B
Fragment: Fucose Binding Module, Residues 601-745
Synonym: Fucose Binding Module
Engineered: Yes
 Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 170187
Strain: Tigr4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.155 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.523 60.771 99.499 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA, FUL enzyme
Primary referenceBlood group antigen recognition by a Streptococcus pneumoniae virulence factor., Boraston AB, Wang D, Burke RD, J Biol Chem. 2006 Nov 17;281(46):35263-71. Epub 2006 Sep 20. PMID:16987809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2j1s.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (2j1s.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2J1S
  • CSU: Contacts of Structural Units for 2J1S
  • Likely Quarternary Molecular Structure file(s) for 2J1S
  • Structure Factors (551 Kb)
  • Retrieve 2J1S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J1S from S2C, [Save to disk]
  • Re-refined 2j1s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J1S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J1S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J1S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j1s_B] [2j1s_A] [2j1s]
  • SWISS-PROT database: [Q97N96]
  • Domain organization of [Q97N96_STRPN] by SWISSPFAM
  • Domain found in 2J1S: [FTP ] by SMART
    • Other resources with information on 2J1S
  • Community annotation for 2J1S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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