2J3T	Transport	date	Aug 23, 2006
title	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex.
authors	Y.Kim, B.Oh
compound		source
Molecule: Trafficking Protein Particle Complex Subunit 3 Chain: A Synonym: Bet3 Homolog Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet30a
Molecule: Trafficking Protein Particle Complex Subunit 6a Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet30a
Molecule: Trafficking Protein Particle Complex Subunit 1 Chain: C Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet30a
Molecule: Trafficking Protein Particle Complex Subunit 4 Chain: D Synonym: Synbindin, Trs23 Homolog, Hematopoietic Stemproge Stemprogenitor Cell Protein 172; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pproexhta, Pet30a
symmetry	Space Group: P 21 21 21	R_factor 0.2074 R_Free 0.2487
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.602 66.336 200.808 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.4 Å
ligand	PLM	enzyme
note	2J3T is a representative structure
Gene Ontology	Chain Function Process Component A B COPII vesicle coating C D
Primary reference	The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering., Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M, Cell. 2006 Nov 17;127(4):817-30. PMID:17110339

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk] Biological Unit Coordinates (2j3t.pdb1.gz) 110 Kb LPC: Ligand-Protein Contacts for 2J3T CSU: Contacts of Structural Units for 2J3T Likely Quarternary Molecular Structure file(s) for 2J3T Structure Factors (270 Kb) Retrieve 2J3T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J3T from S2C, [Save to disk] Re-refined 2j3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J3T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J3T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J3T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j3t] [2j3t_A] [2j3t_D] [2j3t_C] [2j3t_B] SWISS-PROT database: [O75865] [Q5NCF2] [O55013] [Q9Y296] Domain organization of [TPC6A_HUMAN] [TPPC1_MOUSE] [TPPC3_MOUSE] [TPPC4_HUMAN] by SWISSPFAM Domain found in 2J3T: [Sybindin ] by SMART

Other resources with information on 2J3T

Community annotation for 2J3T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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