OCA Atlas for 2J4I

2J4I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, GSJ BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B

Primary reference

Structure- and property-based design of factor Xa inhibitors: pyrrolidin-2-ones with acyclic alanyl amides as P4 motifs., Young RJ, Campbell M, Borthwick AD, Brown D, Burns-Kurtis CL, Chan C, Convery MA, Crowe MC, Dayal S, Diallo H, Kelly HA, King NP, Kleanthous S, Mason AM, Mordaunt JE, Patel C, Pateman AJ, Senger S, Shah GP, Smith PW, Watson NS, Weston HE, Zhou P, Bioorg Med Chem Lett. 2006 Dec 1;16(23):5953-7. Epub 2006 Sep 18. PMID:16982190

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]

Biological Unit Coordinates (2j4i.pdb1.gz) 50 Kb

LPC: Ligand-Protein Contacts for 2J4I

CSU: Contacts of Structural Units for 2J4I

Likely Quarternary Molecular Structure file(s) for 2J4I

Structure Factors (219 Kb)

Retrieve 2J4I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2J4I from S2C, [Save to disk]

Re-refined 2j4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J4I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j4i] [2j4i_A] [2j4i_B]

SWISS-PROT database: [P00742]

Domains found in 2J4I: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

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