2J6A Transferase date Sep 27, 2006
title Structure Of S. Cerevisiae Trm112 Protein, A Methyltransfera Activator
authors V.Heurgue-Hamard, M.Graille, N.Scrima, N.Ulryck, S.Champ, H.Van T R.H.Buckingham
compound source
Molecule: Protein Trm112
Chain: A
Synonym: Ynr046w, Trna Methyltransferase 112
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Yibpc27
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.600 38.460 45.810 90.00 102.24 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, ZN enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe zinc finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast., Heurgue-Hamard V, Graille M, Scrima N, Ulryck N, Champ S, van Tilbeurgh H, Buckingham RH, J Biol Chem. 2006 Nov 24;281(47):36140-8. Epub 2006 Sep 28. PMID:17008308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2j6a.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2J6A
  • CSU: Contacts of Structural Units for 2J6A
  • Likely Quarternary Molecular Structure file(s) for 2J6A
  • Structure Factors (131 Kb)
  • Retrieve 2J6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J6A from S2C, [Save to disk]
  • Re-refined 2j6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J6A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J6A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j6a] [2j6a_A]
  • SWISS-PROT database: [P53738]
  • Domain organization of [TR112_YEAST] by SWISSPFAM
  • Other resources with information on 2J6A
  • Community annotation for 2J6A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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