2J8W Electron Transport date Oct 30, 2006
title The Crystal Structure Of Cytochrome C' From Rubrivivax Gelat 1.3 A Resolution And Ph 8.0
authors S.Benini, S.Ciurli, W.R.Rypniewski, K.S.Wilson
compound source
Molecule: Cytochrome C'
Chain: A, B
Organism_scientific: Rubrivivax Gelatinosus
Organism_taxid: 28068
Strain: Dsm 1709
Other_details: Dsmz
symmetry Space Group: P 31 2 1
R_factor 0.151 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.630 69.630 123.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.29 Å
ligand HEC, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHigh resolution crystal structure of Rubrivivax gelatinosus cytochrome c'., Benini S, Rypniewski WR, Wilson KS, Ciurli S, J Inorg Biochem. 2008 May;102(5-6):1322-8. Epub 2008 Jan 21. PMID:18295896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2j8w.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2J8W
  • CSU: Contacts of Structural Units for 2J8W
  • Likely Quarternary Molecular Structure file(s) for 2J8W
  • Structure Factors (1100 Kb)
  • Retrieve 2J8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8W from S2C, [Save to disk]
  • Re-refined 2j8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J8W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J8W, from MSDmotif at EBI
  • Fold representative 2j8w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8w_A] [2j8w_B] [2j8w]
  • SWISS-PROT database: [P00142]
  • Domain organization of [CYCP_RHOGE] by SWISSPFAM
  • Other resources with information on 2J8W
  • Community annotation for 2J8W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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