2JB8 Oxidoreductase date Dec 05, 2006
title Deacetoxycephalosporin C Synthase Complexed With 5-Hydroxy-4 Valeric Acid
authors G.Cicero, C.Carbonera, K.Valegard, J.Hajdu, I.Andersson, G.Ranghi
compound source
Molecule: Deacetoxycephalosporin C Synthetase
Chain: A
Synonym: Daocs, Expandase, Deacetoxycephalosporin C Synthas
Ec: 1.14.20.1
Engineered: Yes
Organism_scientific: Streptomyces Clavuligerus
Organism_taxid: 1901
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.210 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.500 106.500 71.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.53 Å
ligand FE, HKV enzyme Oxidoreductase E.C.1.14.20.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2jb8.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 2JB8
  • CSU: Contacts of Structural Units for 2JB8
  • Likely Quarternary Molecular Structure file(s) for 2JB8
  • Structure Factors (296 Kb)
  • Retrieve 2JB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JB8 from S2C, [Save to disk]
  • Re-refined 2jb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JB8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JB8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jb8_A] [2jb8]
  • SWISS-PROT database: [P18548]
  • Domain organization of [CEFE_STRCL] by SWISSPFAM
  • Other resources with information on 2JB8
  • Community annotation for 2JB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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