2JC9 Crystal structure of Human Cytosolic 5'-Nucleotidase II in complex with adenosine date
authors Wallden, K., Stenmark, P., Arrowsmith, C., Berglund, H., Busam, R., Collins, R., Edwards, A., Ehn, M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Hallberg, B.M., Holmberg, S.L., Hogbom, M., Karlberg, T., Kotenyova, T., Magnusdottir, A., Nilsson-Ehle, P., Nyman, T., Ogg, D., Persson, C., Sagemark, J., Sundstrom, M., Uppenberg, J., Thorsell, A.G., Berg, S.Van.Den., Loppnau, P., Weigelt, J., Welin, M., Nordlund, P.
compound source
symmetry
R_factor
R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand ADN, GOL, MG, SO4 enzyme
note 2JC9 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • 5'-nucleotidase activity


  • Primary referenceCrystal structure of human cytosolic 5'-nucleotidase II: insights into allosteric regulation and substrate recognition., Wallden K, Stenmark P, Nyman T, Flodin S, Graslund S, Loppnau P, Bianchi V, Nordlund P, J Biol Chem. 2007 Jun 15;282(24):17828-36. Epub 2007 Apr 3. PMID:17405878
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (2jc9.pdb1.gz) 358 Kb
  • LPC: Ligand-Protein Contacts for 2JC9
  • CSU: Contacts of Structural Units for 2JC9
  • Likely Quarternary Molecular Structure file(s) for 2JC9
  • Structure Factors (1671 Kb)
  • Retrieve 2JC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JC9 from S2C, [Save to disk]
  • Re-refined 2jc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JC9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JC9, from MSDmotif at EBI
  • Fold representative 2jc9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jc9_A] [2jc9]
  • SWISS-PROT database: [P49902]
  • Domain organization of [5NTC_HUMAN] by SWISSPFAM
  • Other resources with information on 2JC9
  • Community annotation for 2JC9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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