2JCM Crystal structure of Human Cytosolic 5'-Nucleotidase II in complex with beryllium trifluoride date
authors Wallden, K., Stenmark, P., Arrowsmith, C., Berglund, H., Busam, R., Collins, R., Edwards, A., Ehn, M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Hallberg, B.M., Schiavone, L.Holmberg., Hogbom, M., Karlberg, T., Kotenyova, T., Magnusdottir, A., Nilsson-Ehle, P., Nyman, T., Ogg, D., Persson, C., Sagemark, J., Sundstrom, M., Uppenberg, J., Thorsell, A.G., Berg, S.Van.Den., Loppnau, P., Weigelt, J., Welin, M., Nordlund, P.
compound source
symmetry
R_factor
R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand BFD, MG, SO4, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • 5'-nucleotidase activity


  • Primary referenceCrystal structure of human cytosolic 5'-nucleotidase II: insights into allosteric regulation and substrate recognition., Wallden K, Stenmark P, Nyman T, Flodin S, Graslund S, Loppnau P, Bianchi V, Nordlund P, J Biol Chem. 2007 Jun 15;282(24):17828-36. Epub 2007 Apr 3. PMID:17405878
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2jcm.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 2JCM
  • CSU: Contacts of Structural Units for 2JCM
  • Likely Quarternary Molecular Structure file(s) for 2JCM
  • Structure Factors (601 Kb)
  • Retrieve 2JCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JCM from S2C, [Save to disk]
  • Re-refined 2jcm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JCM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JCM, from MSDmotif at EBI
  • Fold representative 2jcm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jcm] [2jcm_A]
  • SWISS-PROT database: [P49902]
  • Domain organization of [5NTC_HUMAN] by SWISSPFAM
  • Other resources with information on 2JCM
  • Community annotation for 2JCM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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