2JCO Transferase date Dec 28, 2006
title Crystal Structure Of Wild Type Alpha-1,3 Galactosyltransferase In The Absence Of Ligands
authors H.Jamaluddin, P.Tumbale, S.G.Withers, K.R.Acharya, K.Brew
compound source
Molecule: N-Acetyllactosaminide Alpha-1,3-Galactosyl Transferase;
Chain: A
Fragment: Catalytic Domain, Residues 80-368
Synonym: Galactosyltransferase, Udp-Galactose\:Beta-D- Galactosyl-1,4-N-Acetyl- D-Glucosaminide Alpha-1,3- Galactosyltransferasealpha-1,3 Galactosyltransferase;
Ec: 2.4.1.151
Engineered: Yes
Other_details: Glycerol
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet15b
symmetry Space Group: P 41 21 2
R_factor 0.263 R_Free 0.328
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.570 93.570 108.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand GOL enzyme Transferase E.C.2.4.1.151 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational changes induced by binding UDP-2F-galactose to alpha-1,3 galactosyltransferase- implications for catalysis., Jamaluddin H, Tumbale P, Withers SG, Acharya KR, Brew K, J Mol Biol. 2007 Jun 22;369(5):1270-81. Epub 2007 Apr 12. PMID:17493636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2jco.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2JCO
  • CSU: Contacts of Structural Units for 2JCO
  • Likely Quarternary Molecular Structure file(s) for 2JCO
  • Structure Factors (115 Kb)
  • Retrieve 2JCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JCO from S2C, [Save to disk]
  • Re-refined 2jco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JCO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JCO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jco] [2jco_A]
  • SWISS-PROT database: [P14769]
  • Domain organization of [GGTA1_BOVIN] by SWISSPFAM
  • Other resources with information on 2JCO
  • Community annotation for 2JCO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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