2JF3 Transferase date Jan 25, 2007
title Nucleotide Substrate Binding By Udp-N-Acetylglucosamine Acyltransferase
authors V.Ulaganathan, L.Buetow, W.N.Hunter
compound source
Molecule: Acyl-[Acyl-Carrier-Protein]--Udp-N-Acetylglucosam Acyltransferase;
Chain: A
Synonym: Udp-N-Acetylglucosamine Acyltransferase
Ec: 2.3.1.129
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet15b
symmetry Space Group: P 21 3
R_factor 0.218 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.740 97.740 97.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand UD1 enzyme Transferase E.C.2.3.1.129 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNucleotide substrate recognition by UDP-N-acetylglucosamine acyltransferase (LpxA) in the first step of lipid A biosynthesis., Ulaganathan V, Buetow L, Hunter WN, J Mol Biol. 2007 Jun 1;369(2):305-12. Epub 2007 Mar 21. PMID:17434525
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2jf3.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 2JF3
  • CSU: Contacts of Structural Units for 2JF3
  • Likely Quarternary Molecular Structure file(s) for 2JF3
  • Structure Factors (90 Kb)
  • Retrieve 2JF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JF3 from S2C, [Save to disk]
  • Re-refined 2jf3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JF3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JF3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jf3] [2jf3_A]
  • SWISS-PROT database: [P0A722]
  • Domain organization of [LPXA_ECOLI] by SWISSPFAM
    • Other resources with information on 2JF3
  • Community annotation for 2JF3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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