2JF5	Signaling Protein	date	Jan 26, 2007
title	Crystal Structure Of Lys63-Linked Di-Ubiquitin
authors	D.Komander, P.Odenwaelder, D.Barford
compound		source
Molecule: Ubiquitin Chain: A, B Synonym: Di-Ubiquitin, Lys63-Linked Engineered: Yes Other_details: Iso-Peptide Link Between A-Lys63 And B-Gly76		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 Plyss Expression_system_plasmid: Pet17b
symmetry	Space Group: P 43 3 2	R_factor 0.206 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.021 105.021 105.021 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	CD, CL, CO, MG	enzyme
Primary reference	Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains., Komander D, Reyes-Turcu F, Licchesi JD, Odenwaelder P, Wilkinson KD, Barford D, EMBO Rep. 2009 Apr 17. PMID:19373254

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (2jf5.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 2JF5 CSU: Contacts of Structural Units for 2JF5 Likely Quarternary Molecular Structure file(s) for 2JF5 Structure Factors (116 Kb) Retrieve 2JF5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JF5 from S2C, [Save to disk] Re-refined 2jf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JF5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JF5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JF5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jf5] [2jf5_A] [2jf5_B] SWISS-PROT database: [P62988] Domain organization of [UBIQ_HUMAN] by SWISSPFAM Domain found in 2JF5: [UBQ ] by SMART

Other resources with information on 2JF5

Community annotation for 2JF5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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