2JHL	Sugar Binding Protein	date	Feb 22, 2007
title	Structure Of Globular Heads Of M-Ficolin Complexed With Sial
authors	V.Garlatti, L.Martin, E.Gout, J.B.Reiser, G.J.Arlaud, N.M.Thielen C.Gaboriaud
compound		source
Molecule: Ficolin-1 Chain: F Fragment: C-Terminal Domain, Residues 109-326 Synonym: Ficolin-A, Ficolin-Alpha, M-Ficolin, Collagen Fib Domain-Containing Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus Expression_system_vector: Bac-To-Bac Sytem
symmetry	Space Group: H 3	R_factor 0.210 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.930 72.930 124.830 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	CA, SLB	enzyme
Primary reference	Structural basis for innate immune sensing by M-ficolin and its control by a pH-dependent conformational switch., Garlatti V, Martin L, Gout E, Reiser JB, Fujita T, Arlaud GJ, Thielens NM, Gaboriaud C, J Biol Chem. 2007 Sep 26;. PMID:17897951

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (2jhl.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 2JHL CSU: Contacts of Structural Units for 2JHL Likely Quarternary Molecular Structure file(s) for 2JHL Structure Factors (192 Kb) Retrieve 2JHL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JHL from S2C, [Save to disk] Re-refined 2jhl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JHL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JHL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JHL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jhl_F] [2jhl] SWISS-PROT database: [O00602] Domain organization of [FCN1_HUMAN] by SWISSPFAM Domain found in 2JHL: [FBG ] by SMART

Other resources with information on 2JHL

Community annotation for 2JHL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---