2JIL Membrane Protein date Jun 28, 2007
title Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor In Protein-1 (Grip1)
authors J.Tickle, J.Elkins, A.C.W.Pike, C.Cooper, E.Salah, E.Papagrigorio Delft, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.Doyl
compound source
Molecule: Glutamate Receptor Interacting Protein-1
Chain: A, B
Fragment: Pdz Domain 2, Residues 149-239
Synonym: Grip1 Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.060 61.057 96.397 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand EDO, SCN enzyme
note 2JIL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2jil.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (2jil.pdb2.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2JIL
  • CSU: Contacts of Structural Units for 2JIL
  • Likely Quarternary Molecular Structure file(s) for 2JIL
  • Structure Factors (352 Kb)
  • Retrieve 2JIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIL from S2C, [Save to disk]
  • Re-refined 2jil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JIL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jil] [2jil_B] [2jil_A]
  • SWISS-PROT database: [Q9Y3R0]
  • Domain organization of [GRIP1_HUMAN] by SWISSPFAM
  • Domain found in 2JIL: [PDZ ] by SMART
  • Other resources with information on 2JIL
  • Community annotation for 2JIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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