2JLF Transferase date Sep 08, 2008
title Structural Explanation For The Role Of Mn In The Activity Of Dependent Rna Polymerase
authors M.M.Poranen, P.S.Salgado, M.R.L.Koivunen, S.Wright, D.H.Bamford, D.I.Stuart, J.M.Grimes
compound source
Molecule: Rna-Directed Rna Polymerase
Chain: A, B, C
Fragment: Residues 2-665
Synonym: Protein P2
Ec: 2.7.7.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Phage Phi6
Organism_taxid: 10879
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 32
R_factor 0.228 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.040 110.040 159.132 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand MN enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • RNA-directed 5'-3' RNA polym...


  • Primary referenceStructural explanation for the role of Mn2+ in the activity of {phi}6 RNA-dependent RNA polymerase., Poranen MM, Salgado PS, Koivunen MR, Wright S, Bamford DH, Stuart DI, Grimes JM, Nucleic Acids Res. 2008 Oct 21. PMID:18940872
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (2jlf.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (2jlf.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (2jlf.pdb3.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 2JLF
  • CSU: Contacts of Structural Units for 2JLF
  • Likely Quarternary Molecular Structure file(s) for 2JLF
  • Structure Factors (514 Kb)
  • Retrieve 2JLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JLF from S2C, [Save to disk]
  • Re-refined 2jlf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JLF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JLF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jlf_C] [2jlf_B] [2jlf_A] [2jlf]
  • SWISS-PROT database: [P11124]
  • Domain organization of [RDRP_BPPH6] by SWISSPFAM
  • Other resources with information on 2JLF
  • Community annotation for 2JLF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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