2JQ9	Protein Transport	date	May 30, 2007
title	Vps4a Mit-Chmp1a Complex
authors	M.D.Stuchell-Brereton, J.J.Skalicky, C.Kieffer, S.Ghaffarian, W.I.Sundquist
compound		source
Molecule: Vacuolar Protein Sorting-Associating Protein 4a Chain: A Fragment: Mit Domain, Residues 1-84 Synonym: Protein Skd2, Hvps4, Vps4-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps4a, Vps4 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Vector Expression_system_vector: Pet16b
Molecule: Chromatin-Modifying Protein 1a Chain: B Fragment: Sequence Database Residues 180-196 Synonym: Charged Multivesicular Body Protein 1a, Chmp1a, Va Protein Sorting 46-1, Vps46-1, Hvps46-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pcoln3, Chmp1, Chmp1a, Kiaa0047, Prsm1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Vector Expression_system_vector: Pet16b
method	Solution NMR
Primary reference	ESCRT-III recognition by VPS4 ATPases., Stuchell-Brereton MD, Skalicky JJ, Kieffer C, Karren MA, Ghaffarian S, Sundquist WI, Nature. 2007 Oct 11;449(7163):740-4. PMID:17928862

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (505 Kb) [Save to disk] Biological Unit Coordinates (2jq9.pdb1.gz) 26 Kb CSU: Contacts of Structural Units for 2JQ9 Original NMR restraints for 2JQ9 from PDB Retrieve 2JQ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JQ9 from S2C, [Save to disk]

View 2JQ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JQ9

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JQ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jq9] [2jq9_A] [2jq9_B] SWISS-PROT database: [Q9HD42] [Q9UN37] Domain organization of [CHM1A_HUMAN] [VPS4A_HUMAN] by SWISSPFAM Domain found in 2JQ9: [MIT ] by SMART

Other resources with information on 2JQ9

Community annotation for 2JQ9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---