2JVD Structural Genomics, Unknown Function date Sep 18, 2007
title Solution Nmr Structure Of The Folded N-Terminal Fragment Of Protein Ynzc From Bacillus Subtilis. Northeast Structural G Target Sr384-1-46
authors J.M.Aramini, S.Sharma, Y.J.Huang, L.Zhao, L.A.Owens, K.Stokes, M.J R.Xiao, M.C.Baran, G.V.T.Swapna, T.B.Acton, G.T.Montelione, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: Upf0291 Protein Ynzc
Chain: A
Fragment: Residues 1-46
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Ynzc, Bsu17880
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Mgk
Expression_system_vector_type: Plasmid
Expression_system_vector: Sr384-1-46-21.1
Expression_system_plasmid: Pet21
methodSolution NMR
Primary referenceSolution NMR structure of the SOS response protein YnzC from Bacillus subtilis., Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Proteins. 2008 Jul;72(1):526-30. PMID:18431750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (2jvd.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2JVD
  • Original NMR restraints for 2JVD from PDB
  • Retrieve 2JVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JVD from S2C, [Save to disk]
    • View 2JVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JVD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jvd] [2jvd_A]
  • SWISS-PROT database: [O31818]
  • Domain organization of [YNZC_BACSU] by SWISSPFAM
    • Other resources with information on 2JVD
  • Community annotation for 2JVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
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