2JYW	Hydrolase	date	Dec 20, 2007
title	Solution Structure Of C-Terminal Domain Of Apobec3g
authors	K.Chen, E.Harjes, P.J.Gross, A.Fahmy, Y.Lu, K.Shindo, R.S.Harris, H
compound		source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3g Chain: A Fragment: C-Terminal Domain Synonym: Apobec-Related Cytidine Deaminase, Arcd, Apobec-Re Protein, Arp-9, Cem15, Cem-15; Ec: 3.5.4.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3g Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p2_a3g198-384
method	Solution NMR
ligand	ZN	enzyme	Hydrolase E.C.3.5.4 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G., Chen KM, Harjes E, Gross PJ, Fahmy A, Lu Y, Shindo K, Harris RS, Matsuo H, Nature. 2008 Mar 6;452(7183):116-9. Epub 2008 Feb 20. PMID:18288108

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk] Biological Unit Coordinates (2jyw.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2JYW CSU: Contacts of Structural Units for 2JYW Retrieve 2JYW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JYW from S2C, [Save to disk]

View 2JYW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JYW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JYW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jyw_A] [2jyw] SWISS-PROT database: [Q9HC16] Domain organization of [ABC3G_HUMAN] by SWISSPFAM

Other resources with information on 2JYW

Community annotation for 2JYW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---