2K36 Viral Protein date Apr 22, 2008
title Structure Ensemble Backbone And Side-Chain 1h, 13c, And 15n Shift Assignments, 1h-15n Rdcs And 1h-1h Noe Restraints For K7 From The Vaccinia Virus
authors A.P.Kalverda, G.S.Thompson, A.Vogel, M.Schr Der, A.G.Bowie, A.R.K S.W.Homans
compound source
Molecule: Protein K7
Chain: A
Engineered: Yes
 Organism_scientific: Vaccinia Virus
Organism_common: Vacv
Strain: Wr Western Reserve Wr
Gene: K7r
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15
Other_details: The Pet15 Vector Was Modified To Replace The Cleavage Site With An Rtev Cleavage Site
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePoxvirus K7 Protein Adopts a Bcl-2 Fold: Biochemical Mapping of Its Interactions with Human DEAD Box RNA Helicase DDX3., Kalverda AP, Thompson GS, Vogel A, Schroder M, Bowie AG, Khan AR, Homans SW, J Mol Biol. 2008 Sep 27. PMID:18845156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (613 Kb) [Save to disk]
  • Biological Unit Coordinates (2k36.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2K36
  • Original NMR restraints for 2K36 from PDB
  • Retrieve 2K36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K36 from S2C, [Save to disk]
    • View 2K36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K36
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K36, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k36] [2k36_A]
  • SWISS-PROT database: [P68466]
  • Domain organization of [VK07_VACCW] by SWISSPFAM
    • Other resources with information on 2K36
  • Community annotation for 2K36 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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