2K3F Ribosomal Protein date May 06, 2008
title Ribosomal Protein L11 From Thermotoga Maritima
authors H.R.A.Jonker, S.Ilin, H.Schwalbe, J.Woehnert
compound source
Molecule: 50s Ribosomal Protein L11
Chain: A
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Rplk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet11a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceL11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy., Jonker HR, Ilin S, Grimm SK, Wohnert J, Schwalbe H, Nucleic Acids Res. 2007;35(2):441-54. Epub 2006 Dec 14. PMID:17169991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (2k3f.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2K3F
  • Original NMR restraints for 2K3F from PDB
  • Retrieve 2K3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K3F from S2C, [Save to disk]
    • View 2K3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K3F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K3F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k3f] [2k3f_A]
  • SWISS-PROT database: [P29395]
  • Domain organization of [RL11_THEMA] by SWISSPFAM
  • Domain found in 2K3F: [RL11 ] by SMART
    • Other resources with information on 2K3F
  • Community annotation for 2K3F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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