2K52 Structural Genomics, Unknown Function date Jun 24, 2008
title Structure Of Uncharacterized Protein Mj1198 From Methanocald Jannaschii. Northeast Structural Genomics Target Mjr117b
authors P.Rossi, M.Maglaqui, E.L.Foote, K.Hamilton, C.Ciccosanti, R.Xiao, G.Swapna, J.K.Everett, T.B.Acton, B.Rost, G.T.Montelione, Northe Structural Genomics Consortium (Nesg)
compound source
Molecule: Uncharacterized Protein Mj1198
Chain: A
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Gene: Mj1198
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21-23c
Other_details: Expression Media: Mj9 100%N15 5%C13 Mj9 100% 100%C13
methodSolution NMR
note 2K52 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (2k52.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2K52
  • Original NMR restraints for 2K52 from PDB
  • Retrieve 2K52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K52 from S2C, [Save to disk]
    • View 2K52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K52, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k52_A] [2k52]
  • SWISS-PROT database: [Q58598]
  • Domain organization of [Y1198_METJA] by SWISSPFAM
  • Domain found in 2K52: [S1 ] by SMART
    • Other resources with information on 2K52
  • Community annotation for 2K52 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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