2K7G Plant Protein date Aug 10, 2008
title Solution Structure Of Varv F
authors C.K.Wang
compound source
Molecule: Varv Peptide F
Chain: A
 Organism_scientific: Viola Arvensis
Organism_common: European Field Pansy
Organism_taxid: 97415
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCombined X-ray and NMR Analysis of the Stability of the Cyclotide Cystine Knot Fold That Underpins Its Insecticidal Activity and Potential Use as a Drug Scaffold., Wang CK, Hu SH, Martin JL, Sjogren T, Hajdu J, Bohlin L, Claeson P, Goransson U, Rosengren KJ, Tang J, Tan NH, Craik DJ, J Biol Chem. 2009 Apr 17;284(16):10672-83. Epub 2009 Feb 10. PMID:19211551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2k7g.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2K7G
  • Original NMR restraints for 2K7G from PDB
  • Retrieve 2K7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7G from S2C, [Save to disk]
    • View 2K7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K7G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K7G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7g_A] [2k7g]
  • SWISS-PROT database: [P58451]
  • Domain organization of [VARF_VIOAR] by SWISSPFAM
    • Other resources with information on 2K7G
  • Community annotation for 2K7G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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