2K7H Allergen date Aug 11, 2008
title Nmr Solution Structure Of Soybean Allergen Gly M 4
authors H.Berkner, P.Neudecker, D.Mittag, B.K.Ballmer-Weber, K.Schweimer S.Vieths, P.Roesch
compound source
Molecule: Stress-Induced Protein Sam22
Chain: A
Fragment: Unp Residues 2-158
Synonym: Starvation-Associated Message 22, Allergen Gly M 4
Engineered: Yes
 Organism_scientific: Glycine Max
Organism_common: Soybean
Organism_taxid: 3847
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein phosphatase inhibito...


    • Primary referenceCross-reactivity of pollen and food allergens: soybean Gly m 4 is a member of the Bet v 1 superfamily and closely resembles yellow lupine proteins., Berkner H, Neudecker P, Mittag D, Ballmer-Weber BK, Schweimer K, Vieths S, Rosch P, Biosci Rep. 2009 Jun;29(3):183-92. PMID:18834331
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (789 Kb) [Save to disk]
  • Biological Unit Coordinates (2k7h.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2K7H
  • Original NMR restraints for 2K7H from PDB
  • Retrieve 2K7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7H from S2C, [Save to disk]
    • View 2K7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K7H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K7H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7h] [2k7h_A]
  • SWISS-PROT database: [P26987]
  • Domain organization of [SAM22_SOYBN] by SWISSPFAM
    • Other resources with information on 2K7H
  • Community annotation for 2K7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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