2K9N Dna Binding Protein date Oct 19, 2008
title Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb From Protozoan Parasite Trichomonas Vaginalis
authors Y.Lou, S.Wei, M.Rajasekaran, C.Chou, H.Hsu, J.Tai, C.Chen
compound source
Molecule: Myb24
Chain: A
Fragment: Myb1 R2r3 Domain
Engineered: Yes
 Organism_scientific: Trichomonas Vaginalis
Organism_taxid: 5722
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet29b
methodSolution NMR
Primary referenceNMR structural analysis of DNA recognition by a novel Myb1 DNA-binding domain in the protozoan parasite Trichomonas vaginalis., Lou YC, Wei SY, Rajasekaran M, Chou CC, Hsu HM, Tai JH, Chen C, Nucleic Acids Res. 2009 Feb 26. PMID:19246540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (599 Kb) [Save to disk]
  • Biological Unit Coordinates (2k9n.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2K9N
  • Original NMR restraints for 2K9N from PDB
  • Retrieve 2K9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K9N from S2C, [Save to disk]
    • View 2K9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K9N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K9N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k9n] [2k9n_A]
  • SWISS-PROT database: [Q58HP2]
  • Domain organization of [Q58HP2_TRIVA] by SWISSPFAM
  • Domain found in 2K9N: [SANT ] by SMART
    • Other resources with information on 2K9N
  • Community annotation for 2K9N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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