2KCF Isomerase date Dec 19, 2008
title The Nmr Solution Structure Of The Isolated Apo Pin1 Ww Domai
authors J.A.Kowalski, K.Liu, J.W.Kelly
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A
Synonym: Rotamase Pin1, Ppiase Pin1
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Pin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Primary referenceNMR solution structure of the isolated Apo Pin1 WW domain: comparison to the x-ray crystal structures of Pin1., Kowalski JA, Liu K, Kelly JW, Biopolymers. 2002 Feb;63(2):111-21. PMID:11786999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2kcf.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2KCF
  • Original NMR restraints for 2KCF from PDB
  • Retrieve 2KCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KCF from S2C, [Save to disk]
    • View 2KCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KCF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KCF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kcf] [2kcf_A]
  • SWISS-PROT database: [Q13526]
  • Domain organization of [PIN1_HUMAN] by SWISSPFAM
  • Domain found in 2KCF: [WW ] by SMART
    • Other resources with information on 2KCF
  • Community annotation for 2KCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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