2KDC Transferase date Jan 06, 2009
title Nmr Solution Structure Of E. Coli Diacylglycerol Kinase (Dag Micelles
authors W.D.Van Horn, H.Kim, C.D.Ellis, A.Hadziselimovic, E.S.Sulistijo, M.D.Karra, C.Tian, F.D.Sonnichsen, C.R.Sanders
compound source
Molecule: Diacylglycerol Kinase
Chain: A, B, C
Synonym: Dagk, Diglyceride Kinase, Dgk
Ec: 2.7.1.107
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Gene: Dgka, B4042, Jw4002
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Psd004
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.107 BRENDA
note 2KDC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceSolution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase., Van Horn WD, Kim HJ, Ellis CD, Hadziselimovic A, Sulistijo ES, Karra MD, Tian C, Sonnichsen FD, Sanders CR, Science. 2009 Jun 26;324(5935):1726-9. PMID:19556511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1535 Kb) [Save to disk]
  • Biological Unit Coordinates (2kdc.pdb1.gz) 95 Kb
  • CSU: Contacts of Structural Units for 2KDC
  • Likely Quarternary Molecular Structure file(s) for 2KDC
  • Original NMR restraints for 2KDC from PDB
  • Retrieve 2KDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KDC from S2C, [Save to disk]
  • View 2KDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KDC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KDC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kdc] [2kdc_B] [2kdc_C] [2kdc_A]
  • SWISS-PROT database: [P0ABN1]
  • Domain organization of [KDGL_ECOLI] by SWISSPFAM
  • Other resources with information on 2KDC
  • Community annotation for 2KDC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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