2KH9 Splicing Rna date Mar 27, 2009
title Solution Structure Of Yeast Prp24-Rrm2 Bound To A Fragment O
authors S.A.Martin-Tumasz, S.E.Butcher
compound source
Molecule: U4u6 Snrna-Associated-Splicing Factor Prp24
Chain: A
Fragment: Unp Residues 115-197
Synonym: U4u6 Snrnp Protein
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Prp24, Ymr268c, Ym8156.10c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b

Molecule: 5'-R(Apgpapgpapu)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Rna
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24., Martin-Tumasz S, Reiter NJ, Brow DA, Butcher SE, RNA. 2010 Feb 24. PMID:20181740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (2kh9.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2KH9
  • Original NMR restraints for 2KH9 from PDB
  • Retrieve 2KH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KH9 from S2C, [Save to disk]
    • View 2KH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KH9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KH9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kh9] [2kh9_B] [2kh9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KH9: [RRM ] by SMART
    • Other resources with information on 2KH9
  • Community annotation for 2KH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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