2KKF Dna Binding Protein Dna date Jun 18, 2009
title Solution Structure Of Mll Cxxc Domain In Complex With Palind Dna
authors T.Cierpicki, J.E.Riesbeck, J.E.Grembecka, S.M.Lukasik, R.Popovic M.Omonkowska, D.S.Shultis, N.J.Zeleznik-Le, J.H.Bushweller
compound source
Molecule: Histone-Lysine N-Methyltransferase Hrx
Chain: A
Fragment: Cxxc Domain: Unp Residues 1147-1203
Synonym: Zinc Finger Protein Hrx, All-1, Trithorax-Like Pro Lysine N-Methyltransferase 2a, Cxxc-Type Zinc Finger Protei
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: All1, Cxxc7, Hrx, Htrx, Kmt2a, Mll, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4-T2

Molecule: 5'-D(Cpcpcptpgpcpgpcpapgpgpg)-3'
Chain: B, C
Engineered: Yes

Synthetic: Yes
Other_details: Palindromic Dna
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the MLL CXXC domain-DNA complex and its functional role in MLL-AF9 leukemia., Cierpicki T, Risner LE, Grembecka J, Lukasik SM, Popovic R, Omonkowska M, Shultis DD, Zeleznik-Le NJ, Bushweller JH, Nat Struct Mol Biol. 2010 Jan;17(1):62-8. Epub 2009 Dec 13. PMID:20010842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (2kkf.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2KKF
  • CSU: Contacts of Structural Units for 2KKF
  • Original NMR restraints for 2KKF from PDB
  • Retrieve 2KKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KKF from S2C, [Save to disk]
  • View 2KKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KKF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KKF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kkf_A] [2kkf_C] [2kkf] [2kkf_B]
  • SWISS-PROT database: [Q03164]
  • Domain organization of [MLL1_HUMAN] by SWISSPFAM
  • Other resources with information on 2KKF
  • Community annotation for 2KKF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science