2KN5 Gene Regulation date Aug 14, 2009
title A Correspondence Between Solution-State Dynamics Of An Indiv Protein And The Sequence And Conformational Diversity Of It
authors G.D.Friedland
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1, Uba52, Ubcep2, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceA correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family., Friedland GD, Lakomek NA, Griesinger C, Meiler J, Kortemme T, PLoS Comput Biol. 2009 May;5(5):e1000393. Epub 2009 May 29. PMID:19478996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1072 Kb) [Save to disk]
  • Biological Unit Coordinates (2kn5.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2KN5
  • Original NMR restraints for 2KN5 from PDB
  • Retrieve 2KN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KN5 from S2C, [Save to disk]
  • View 2KN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KN5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KN5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kn5_A] [2kn5]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 2KN5: [UBQ ] by SMART
  • Other resources with information on 2KN5
  • Community annotation for 2KN5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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