2KPY Allergen date Oct 23, 2009
title Solution Structure Of The Major Allergen Of Artemisia Vulgar 1)
authors G.Razzera, G.Gadermaier, M.Almeida, M.Egger, B.Jahn-Schmid, F.Alm F.Ferreira, A.Valente
compound source
Molecule: Major Pollen Allergen Art V 1
Chain: A
Fragment: Residues 25-132
Synonym: Defensin-Like Protein 1
Engineered: Yes
 Organism_scientific: Artemisia Vulgaris
Organism_common: Common Wormwood
Organism_taxid: 4220
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami B(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis Parellel2
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMapping the interactions between a major pollen allergen and human IgE antibodies., Razzera G, Gadermaier G, de Paula V, Almeida MS, Egger M, Jahn-Schmid B, Almeida FC, Ferreira F, Valente AP, Structure. 2010 Aug 11;18(8):1011-21. PMID:20696401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk]
  • Biological Unit Coordinates (2kpy.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2KPY
  • Original NMR restraints for 2KPY from PDB
  • Retrieve 2KPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KPY from S2C, [Save to disk]
    • View 2KPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KPY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KPY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kpy] [2kpy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KPY: [Knot1 ] by SMART
    • Other resources with information on 2KPY
  • Community annotation for 2KPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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