2KSY Membrane Protein date Jan 14, 2010
title Solution Nmr Structure Of Sensory Rhodopsin II
authors A.Gautier, H.R.Mott, M.J.Bostock, J.P.Kirkpatrick, D.Nietlispach
compound source
Molecule: Sensory Rhodopsin II
Chain: A
Engineered: Yes
 Organism_scientific: Natronomonas Pharaonis
Organism_taxid: 2257
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28
methodSolution NMR
ligand RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of the seven-helix transmembrane receptor sensory rhodopsin II by solution NMR spectroscopy., Gautier A, Mott HR, Bostock MJ, Kirkpatrick JP, Nietlispach D, Nat Struct Mol Biol. 2010 Jun;17(6):768-74. Epub 2010 May 30. PMID:20512150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1914 Kb) [Save to disk]
  • Biological Unit Coordinates (2ksy.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2KSY
  • CSU: Contacts of Structural Units for 2KSY
  • Original NMR restraints for 2KSY from PDB
  • Retrieve 2KSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSY from S2C, [Save to disk]
    • View 2KSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KSY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KSY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksy] [2ksy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KSY: [Bac_rhodopsin ] by SMART
    • Other resources with information on 2KSY
  • Community annotation for 2KSY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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