2KWG Rna date Apr 09, 2010
title Solution Structure Of A Fully Modified 2'-F2'-Ome Sirna Con
authors P.Podbevsek, B.Bhat, J.Plavec
compound source
Molecule: 5'-R((Gf2)P(Omg)P(Gf2)P(Omu)P(Af2)P(A2m)P( P(Omu)P(Af2)P(Omc)P(Af2)P(Omu)P(Uft)P(Omc)P(Uft)P( P(Cfz)P(A2m)P(Uft)P(Omu)P(Uft))-3';
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-R(P(A2m)P(Uft)P(Omg)P(Af2)P(A2m)P(Gf2)P P(Af2)P(Omu)P(Gf2)P(Omu)P(Af2)P(Omu)P(Uft)P(Omu)P( P(Omc)P(Cfz)P(Omc)P(Uft)P(Omu))-3';
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand A2M, AF2, CFZ, GF2, OMC, OMG, OMU, UFT enzyme
Primary referenceSolution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct., Podbevsek P, Allerson CR, Bhat B, Plavec J, Nucleic Acids Res. 2010 Jul 12. PMID:20624819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (2kwg.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2KWG
  • CSU: Contacts of Structural Units for 2KWG
  • Original NMR restraints for 2KWG from PDB
  • Retrieve 2KWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KWG from S2C, [Save to disk]
    • View 2KWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KWG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KWG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kwg] [2kwg_A] [2kwg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KWG
  • Community annotation for 2KWG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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