2KYE Rna date May 25, 2010
title Solution Structure Of The Pseudouridine Modified P6.1 Hairpi Telomerase Rna
authors N.K.Kim, C.A.Theimer, J.R.Mitchell, K.Collins, J.Feigon
compound source
Molecule: Rna (5'-R(Gpapgpapgp(Psu)P(Psu)Pgpgpgp Pcp(Psu)Pc)-3');
Chain: A
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand PSU enzyme
Primary referenceEffect of pseudouridylation on the structure and activity of the catalytically essential P6.1 hairpin in human telomerase RNA., Kim NK, Theimer CA, Mitchell JR, Collins K, Feigon J, Nucleic Acids Res. 2010 Jun 16. PMID:20554853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (2kye.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 2KYE
  • CSU: Contacts of Structural Units for 2KYE
  • Original NMR restraints for 2KYE from PDB
  • Retrieve 2KYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYE from S2C, [Save to disk]
  • View 2KYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KYE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KYE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kye] [2kye_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KYE
  • Community annotation for 2KYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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