2KYS Viral Protein date Jun 07, 2010
title Nmr Structure Of The Sars Coronavirus Nonstructural Protein Solution At Ph 6.5
authors M.A.Johnson, K.Jaudzems, I.A.Wilson, K.Wuthrich, Joint Center Fo Structural Genomics (Jcsg)
compound source
Molecule: Non-Structural Protein 7
Chain: A
Synonym: Nsp7
Engineered: Yes
 Organism_scientific: Sars Coronavirus
Organism_taxid: 227859
Strain: Tor2
Gene: 1a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector: Pet-28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH 6.5., Johnson MA, Jaudzems K, Wuthrich K, J Mol Biol. 2010 Oct 1;402(4):619-28. Epub 2010 Aug 13. PMID:20709084
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (2kys.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2KYS
  • Original NMR restraints for 2KYS from PDB
  • Retrieve 2KYS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYS from S2C, [Save to disk]
    • View 2KYS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KYS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KYS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kys_A] [2kys]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KYS
  • Community annotation for 2KYS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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