2L3U Structural Genomics, Unknown Function date Sep 23, 2010
title Solution Structure Of Domain Iv From The Ybbr Family Protein Desulfitobacterium Hafniense: Northeast Structural Genomics Consortium Target Dhr29a
authors A.W.Barb, H.Lee, R.L.Belote, C.Ciccosanti, K.Hamilton, T.B.Acton, J.K.Everett, G.T.Montelione, J.H.Prestegard, Northeast Structu Genomics Consortium (Nesg)
compound source
Molecule: Ybbr Family Protein
Chain: A
Fragment: Sequence Database Residues 321-409
Engineered: Yes
 Organism_scientific: Desulfitobacterium Hafniense
Organism_taxid: 272564
Strain: Dcb-2 Dsm 10664
Gene: Dhaf_0833
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet 21
methodSolution NMR
note 2L3U supersedes 2KPS
Gene DHAF
Primary referenceStructures of domains I and IV from YbbR are representative of a widely distributed protein family., Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH, Protein Sci. 2011 Feb;20(2):396-405. doi: 10.1002/pro.571. Epub 2011 Jan, 18. PMID:21154411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (2l3u.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2L3U
  • Original NMR restraints for 2L3U from PDB
  • Retrieve 2L3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L3U from S2C, [Save to disk]
    • View 2L3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L3U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L3U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l3u] [2l3u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L3U
  • Community annotation for 2L3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science