2L5B Apoptosis date Oct 29, 2010
title Solution Structure Of The Transmembrane Domain Of Bcl-2 Memb Harakiri In Micelles
authors S.Barrera-Vilarmau, P.Obregon, E.De Alba
compound source
Molecule: Activator Of Apoptosis Harakiri
Chain: A
Fragment: Unp Residues 61-91
Synonym: Bh3-Interacting Domain-Containing Protein 3, Neuro Protein Dp5;
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
ligand NH2 enzyme
note 2L5B is a representative structure
Primary referenceIntrinsic order and disorder in the bcl-2 member harakiri: insights into its proapoptotic activity., Barrera-Vilarmau S, Obregon P, de Alba E, PLoS One. 2011;6(6):e21413. Epub 2011 Jun 23. PMID:21731739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (2l5b.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 2L5B
  • CSU: Contacts of Structural Units for 2L5B
  • Original NMR restraints for 2L5B from PDB
  • Retrieve 2L5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L5B from S2C, [Save to disk]
    • View 2L5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L5B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L5B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l5b_A] [2l5b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L5B
  • Community annotation for 2L5B at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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