2LPZ Atomic model of the Type-III Secretion System Needle date
authors Loquet, A., Sgourakis, N.G., Gupta, R., Giller, K., Riedel, D., Goosmann, C., Griesinger, C., Kolbe, M.G., Baker, D., Becker, S., Lange, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
S, F, a, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, c, b, D, R, I, G, U


Primary referenceAtomic model of the type III secretion system needle., Loquet A, Sgourakis NG, Gupta R, Giller K, Riedel D, Goosmann C, Griesinger C, Kolbe M, Baker D, Becker S, Lange A, Nature. 2012 May 20;486(7402):276-9. doi: 10.1038/nature11079. PMID:22699623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6097 Kb) [Save to disk]
  • Biological Unit Coordinates (2lpz.pdb1.gz) 596 Kb
  • CSU: Contacts of Structural Units for 2LPZ
  • Original NMR restraints for 2LPZ from PDB
  • Retrieve 2LPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LPZ from S2C, [Save to disk]
    • View 2LPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LPZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LPZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lpz_D] [2lpz_P] [2lpz_S] [2lpz_Z] [2lpz_I] [2lpz] [2lpz_c] [2lpz_O] [2lpz_J] [2lpz_H] [2lpz_Y] [2lpz_E] [2lpz_C] [2lpz_Q] [2lpz_K] [2lpz_a] [2lpz_A] [2lpz_T] [2lpz_X] [2lpz_b] [2lpz_L] [2lpz_B] [2lpz_N] [2lpz_V] [2lpz_G] [2lpz_W] [2lpz_M] [2lpz_U] [2lpz_R] [2lpz_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LPZ
  • Community annotation for 2LPZ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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