2LVN Ligase date Jul 09, 2012
title Structure Of The Gp78 Cue Domain
authors S.Liu, Y.Chen, T.Huang, S.G.Tarasov, A.King, J.Li, A.M.Weissman, R. R.Das
compound source
Molecule: E3 Ubiquitin-Protein Ligase Amfr
Chain: C
Fragment: Cue Domain Residues 453-504
Synonym: Autocrine Motility Factor Receptor, Isoform 2, Amf Isoform 2, Ring Finger Protein 45, Gp78;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Amfr, Rnf45
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet3a
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Primary referencePromiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains., Liu S, Chen Y, Li J, Huang T, Tarasov S, King A, Weissman AM, Byrd RA, Das R, Structure. 2012 Oct 31. pii: S0969-2126(12)00373-5. doi:, 10.1016/j.str.2012.09.020. PMID:23123110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (2lvn.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2LVN
  • Original NMR restraints for 2LVN from PDB
  • Retrieve 2LVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LVN from S2C, [Save to disk]
  • View 2LVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LVN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LVN, from MSDmotif at EBI
  • Fold representative 2lvn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lvn] [2lvn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LVN: [CUE ] by SMART
  • Other resources with information on 2LVN
  • Community annotation for 2LVN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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