2LVO Structure of the gp78CUE domain bound to monubiquitin date
authors Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referencePromiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains., Liu S, Chen Y, Li J, Huang T, Tarasov S, King A, Weissman AM, Byrd RA, Das R, Structure. 2012 Oct 31. pii: S0969-2126(12)00373-5. doi:, 10.1016/j.str.2012.09.020. PMID:23123110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (693 Kb) [Save to disk]
  • Biological Unit Coordinates (2lvo.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2LVO
  • Original NMR restraints for 2LVO from PDB
  • Retrieve 2LVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LVO from S2C, [Save to disk]
  • View 2LVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LVO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LVO, from MSDmotif at EBI
  • Fold representative 2lvo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lvo_C] [2lvo] [2lvo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2LVO: [CUE] [UBQ ] by SMART
  • Other resources with information on 2LVO
  • Community annotation for 2LVO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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