2LVP gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin date
authors Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referencePromiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains., Liu S, Chen Y, Li J, Huang T, Tarasov S, King A, Weissman AM, Byrd RA, Das R, Structure. 2012 Oct 31. pii: S0969-2126(12)00373-5. doi:, 10.1016/j.str.2012.09.020. PMID:23123110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1111 Kb) [Save to disk]
  • Biological Unit Coordinates (2lvp.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 2LVP
  • Original NMR restraints for 2LVP from PDB
  • Retrieve 2LVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LVP from S2C, [Save to disk]
  • View 2LVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LVP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LVP, from MSDmotif at EBI
  • Fold representative 2lvp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lvp] [2lvp_A] [2lvp_B] [2lvp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2LVP: [CUE] [UBQ ] by SMART
  • Other resources with information on 2LVP
  • Community annotation for 2LVP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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