2M8L HIV capsid dimer structure date
authors Deshmukh, L., Schwieters, C.D., Grishaev, A., Clore, G., Ghirlando, R.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
A, B

Primary referenceStructure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution., Deshmukh L, Schwieters CD, Grishaev A, Ghirlando R, Baber JL, Clore GM, J Am Chem Soc. 2013 Oct 17. PMID:24066695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11598 Kb) [Save to disk]
  • Biological Unit Coordinates (2m8l.pdb1.gz) 119 Kb
  • CSU: Contacts of Structural Units for 2M8L
  • Original NMR restraints for 2M8L from PDB
  • Retrieve 2M8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M8L from S2C, [Save to disk]
  • View 2M8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M8L, from MSDmotif at EBI
  • Fold representative 2m8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m8l_B] [2m8l] [2m8l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M8L
  • Community annotation for 2M8L at PDBWiki (http://pdbwiki.org)

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