2MDB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NH2	enzyme
Primary reference	Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide., Kushibiki T, Kamiya M, Aizawa T, Kumaki Y, Kikukawa T, Mizuguchi M, Demura M, Kawabata SI, Kawano K, Biochim Biophys Acta. 2014 Jan 2;1844(3):527-534. doi:, 10.1016/j.bbapap.2013.12.017. PMID:24389234

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (2mdb.pdb1.gz) 6 Kb LPC: Ligand-Protein Contacts for 2MDB CSU: Contacts of Structural Units for 2MDB Original NMR restraints for 2MDB from PDB Retrieve 2MDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2MDB from S2C, [Save to disk]

View 2MDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2mdb] [2mdb_A] SWISS-PROT database:

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