2MQV Viral Protein Rna date Jun 27, 2014
title Solution Nmr Structure Of The U5-Primer Binding Site (U5-Pbs Of Murine Leukemia Virus Rna Genome Bound To The Retroviral Nucleocapsid Protein
authors V.M.D'Souza, Z.Yildiz
compound source
Molecule: Nucleocapsid Protein P10
Chain: A
Engineered: Yes
 Organism_scientific: Murine Leukemia Virus
Organism_taxid: 11786
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pcna

Molecule: Rna (68-Mer)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Murine Leukemia Virus
Organism_taxid: 11786
Other_details: In Vitro Transcription
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing., Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM, Nature. 2014 Sep 7. doi: 10.1038/nature13709. PMID:25209668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (520 Kb) [Save to disk]
  • Biological Unit Coordinates (2mqv.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2MQV
  • CSU: Contacts of Structural Units for 2MQV
  • Original NMR restraints for 2MQV from PDB
  • Retrieve 2MQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MQV from S2C, [Save to disk]
    • View 2MQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MQV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mqv_A] [2mqv_B] [2mqv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MQV: [ZnF_C2HC ] by SMART
    • Other resources with information on 2MQV
  • Community annotation for 2MQV at PDBWiki (http://pdbwiki.org)

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