2MWS Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 date
authors Fushman, D., Nowicka, U., Walker, O.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 3X9 enzyme
Primary referenceDNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin., Nowicka U, Zhang D, Walker O, Krutauz D, Castaneda CA, Chaturvedi A, Chen TY, Reis N, Glickman MH, Fushman D, Structure. 2015 Mar 3;23(3):542-57. doi: 10.1016/j.str.2015.01.010. Epub 2015 Feb, 19. PMID:25703377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (2mws.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2MWS
  • CSU: Contacts of Structural Units for 2MWS
  • Original NMR restraints for 2MWS from PDB
  • Retrieve 2MWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MWS from S2C, [Save to disk]
  • View 2MWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MWS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MWS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mws_B] [2mws] [2mws_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MWS: [UBQ ] by SMART
  • Other resources with information on 2MWS
  • Community annotation for 2MWS at PDBWiki (http://pdbwiki.org)

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