2NLA Apoptosis date Oct 19, 2006
title Crystal Structure Of The Mcl-1:Mnoxab Bh3 Complex
authors P.E.Czabotar, P.M.Colman
compound source
Molecule: Fusion Protein Consisting Of Induced Myeloid Leuk Differentiation Protein Mcl-1 Homolog;
Chain: A
Fragment: Residues 171-208 And Residues 209-327
Engineered: Yes
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Mouse, Human
Organism_taxid: 10090, 9606
Strain: ,
Gene: Mcl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p3

Molecule: Phorbol-12-Myristate-13-Acetate-Induced Protein 1
Chain: B
Fragment: Bh3 (Unp Residues 68-93)
Synonym: Protein Noxa

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 63
R_factor 0.207 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.381 85.381 46.916 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural insights into the degradation of Mcl-1 induced by BH3 domains., Czabotar PE, Lee EF, van Delft MF, Day CL, Smith BJ, Huang DC, Fairlie WD, Hinds MG, Colman PM, Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6217-22. Epub 2007 Mar 27. PMID:17389404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2nla.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2NLA
  • Likely Quarternary Molecular Structure file(s) for 2NLA
  • Structure Factors (25 Kb)
  • Retrieve 2NLA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NLA from S2C, [Save to disk]
  • Re-refined 2nla structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NLA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NLA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NLA, from MSDmotif at EBI
  • Fold representative 2nla from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nla] [2nla_A] [2nla_B]
  • SWISS-PROT database: [Q9JM54] [Q07820] [P97287]
  • Domain organization of [APR_MOUSE] [MCL1_HUMAN] [MCL1_MOUSE] by SWISSPFAM
  • Domain found in 2NLA: [BCL ] by SMART
  • Other resources with information on 2NLA
  • Community annotation for 2NLA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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