2NQL Structural Genomics, Unknown Function date Oct 31, 2006
title Crystal Structure Of A Member Of The Enolase Superfamily Fro Agrobacterium Tumefaciens
authors Y.Patskovsky, U.Ramagopal, R.Toro, J.M.Sauder, M.Dickey, J.M.Adam S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Isomeraselactonizing Enzyme
Chain: A, B
Synonym: Agr_pat_674p
Engineered: Yes
 Organism_scientific: Agrobacterium Fabrum Str. C58
Organism_taxid: 176299
Strain: C58
Gene: Agr_pat_674
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 65 2 2
R_factor 0.169 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.071 102.071 369.202 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, NA, SO4, UNL enzyme
Gene AGR (P. aspera)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (2nql.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (2nql.pdb2.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 2NQL
  • CSU: Contacts of Structural Units for 2NQL
  • Likely Quarternary Molecular Structure file(s) for 2NQL
  • Structure Factors (809 Kb)
  • Retrieve 2NQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NQL from S2C, [Save to disk]
  • Re-refined 2nql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2NQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NQL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nql_B] [2nql] [2nql_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2NQL: [MR_MLE ] by SMART
    • Other resources with information on 2NQL
  • Community annotation for 2NQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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