2NRY	Transferase	date	Nov 02, 2006
title	Crystal Structure Of Irak-4
authors	Z.Wang, J.Liu, N.P.C.Walker
compound		source
Molecule: Interleukin-1 Receptor-Associated Kinase 4 Chain: A, B, C, D Fragment: Protein Kinase Synonym: Irak-4, Ny- Ren-64 Antigen Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469
symmetry	Space Group: C 1 2 1	R_factor 0.209 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.502 139.748 87.656 90.00 123.76 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	STU, TPO BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structures of IRAK-4 kinase in complex with inhibitors: a serine/threonine kinase with tyrosine as a gatekeeper., Wang Z, Liu J, Sudom A, Ayres M, Li S, Wesche H, Powers JP, Walker NP, Structure. 2006 Dec;14(12):1835-44. PMID:17161373

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk] Biological Unit Coordinates (2nry.pdb1.gz) 51 Kb Biological Unit Coordinates (2nry.pdb2.gz) 51 Kb Biological Unit Coordinates (2nry.pdb3.gz) 48 Kb Biological Unit Coordinates (2nry.pdb4.gz) 48 Kb LPC: Ligand-Protein Contacts for 2NRY CSU: Contacts of Structural Units for 2NRY Likely Quarternary Molecular Structure file(s) for 2NRY Structure Factors (616 Kb) Retrieve 2NRY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NRY from S2C, [Save to disk] Re-refined 2nry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NRY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NRY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NRY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nry_C] [2nry_D] [2nry_A] [2nry_B] [2nry] SWISS-PROT database: [Q9NWZ3] Domain organization of [IRAK4_HUMAN] by SWISSPFAM Domain found in 2NRY: [STYKc ] by SMART

Other resources with information on 2NRY

Community annotation for 2NRY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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