2NZ4	Structural Protein Rna	date	Nov 22, 2006
title	Structural Investigation Of The Glms Ribozyme Bound To Its C Cofactor
authors	J.C.Cochrane
compound		source
Molecule: Substrate Strand Rna 13-Mer Chain: E, F, G, H Engineered: Yes		Synthetic: Yes
Molecule: Glms Ribozyme Chain: P, Q, R, S Engineered: Yes		Synthetic: Yes Other_details: In Vitro Syntesis From A Plasmid Dna Templat Natural Sequence From Bacillus Anthracis;
Molecule: U1 Small Nuclear Ribonucleoprotein A Chain: A, B, C, D Fragment: Rna Binding Domain Synonym: U1 Snrnp Protein A; U1a Protein; U1-A Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Snrpa Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11
symmetry	Space Group: P 1 21 1	R_factor 0.222 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.127 234.157 105.003 90.00 90.65 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	A2M, GLP, GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Investigation of the GlmS Ribozyme Bound to Its Catalytic Cofactor., Cochrane JC, Lipchock SV, Strobel SA, Chem Biol. 2006 Dec 26;. PMID:17196404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk] Biological Unit Coordinates (2nz4.pdb1.gz) 80 Kb Biological Unit Coordinates (2nz4.pdb2.gz) 81 Kb Biological Unit Coordinates (2nz4.pdb3.gz) 81 Kb Biological Unit Coordinates (2nz4.pdb4.gz) 80 Kb LPC: Ligand-Protein Contacts for 2NZ4 CSU: Contacts of Structural Units for 2NZ4 Likely Quarternary Molecular Structure file(s) for 2NZ4 Structure Factors (1254 Kb) Retrieve 2NZ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NZ4 from S2C, [Save to disk] Re-refined 2nz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NZ4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NZ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NZ4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nz4_S] [2nz4_G] [2nz4_R] [2nz4_H] [2nz4] [2nz4_B] [2nz4_P] [2nz4_D] [2nz4_F] [2nz4_A] [2nz4_C] [2nz4_Q] [2nz4_E] SWISS-PROT database: [P09012] Domain organization of [SNRPA_HUMAN] by SWISSPFAM Domain found in 2NZ4: [RRM ] by SMART

Other resources with information on 2NZ4

Community annotation for 2NZ4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---